NLPMed-Portal Demo (1.1.0)
Demo Only – Do NOT enter any PHI!
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Annotation
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NLP
LLM
Clinical Models
Overview
VTE Model
Bleeding Model
View as: Annotator 2
Annotator 1
Annotator 2
Adjudicator
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General Information
Name
Description
Date Range
-
months ≤ Index Date ≤ +
months
Only used for display purposes. Use 0 to show all data.
Annotation Type
Classification
Named-Entity Recognition
Required Patient
Annotations:
Adjudications:
Pre-fill VTE Settings
Pre-fill Bleeding Settings
Labels Information
Label Category
Label Value
Add Value
Add Label Category
NLP Settings
Enable All
Disable All
Encoding_fixer
Pattern_replacer
Pattern
Regex pattern to replace in the text.
Target
Target string to replace matched pattern.
Word_masker
PE CT PE-CT PE/CT CT PE CT/PE CT-PE DVT US DVT U/S DVT ultrasound PE protocol PE study PE technique PE scan DVT protocol DVT study DVT technique DVT scan VTE prophylaxis VTE prophy VTE ppx DVT prophylaxis DVT prophy DVT ppx
Words to mask
Enter words to mask, one per line.
Mask char
Character used for masking.
Note_filter
DVT PE VTE deep vein thrombus deep vein thrombi deep vein thrombosis deep vein thromboses deep vein thromboembolism deep venous thrombus deep venous thrombi deep venous thrombosis deep venous thromboses deep venous thromboembolism pulmonary embolus pulmonary emboli pulmonary embolic pulmonary embolism pulmonary thromboembolism pulmonary artery embolus pulmonary artery emboli pulmonary artery embolic pulmonary artery embolism pulmonary artery thromboembolism pulmonary arterial embolus pulmonary arterial emboli pulmonary arterial embolic pulmonary arterial embolism pulmonary arterial thromboembolism thromboemboli clot embolus emboli embolic embolism embolisms thrombus thrombi thrombotic thrombosis thrombosed phlebitis thrombophlebitis filling defect filling defects
Words to search
Enter keywords to search in notes, one per line.
Section_splitter
Delimiter
Delimiter used to split sections.
Section_filter
chief complaint cc: present illness history of present illness hpi clinical presentation clinical history interval history interim history clinical hx interval hx interim hx patient history patient hx subjective subj assessment impression impressions plan suggestion discussion conclusion conclusions recommendation rec recs a&p a &p a& p a/p a /p a/ p ap a p: s: a: p: attestation addendum attending note staff note teaching physician note ed course hospital course hospital summary brief summary of hospital course brief hospital course
Section inc list
Enter keywords to include sections, one per line.
review of system system review systems review hematologic history hematological history heme history oncological history oncologic history onc history hematologic hx hematological hx heme hx oncological hx oncologic hx onc hx past h past med past surg medical h social h family h medication allerg physical exam vital ros pmh: pmhx psh: pshx sh: shx fh: fhx med: meds general gen: pe: v/s data lab labs laboratory image imaging radiology pathology path problem problems objective obj o: diagnosis discharge condition disposition discharge medication medication list consults procedures
Section exc list
Enter keywords to exclude sections, one per line.
Fallback
Enable fallback behavior if no sections match.
Sentence_segmenter
en_core_sci_lg
Model name
Name of the model used for sentence segmentation.
Batch size
Batch size for processing.
Duplicate_checker
Num perm
Number of permutations for MinHash.
Sim threshold
Similarity threshold for duplicates.
Length threshold
Length threshold for checking duplicates.
Sentence_filter
DVT PE VTE deep vein thrombus deep vein thrombi deep vein thrombosis deep vein thromboses deep vein thromboembolism deep venous thrombus deep venous thrombi deep venous thrombosis deep venous thromboses deep venous thromboembolism pulmonary embolus pulmonary emboli pulmonary embolic pulmonary embolism pulmonary thromboembolism pulmonary artery embolus pulmonary artery emboli pulmonary artery embolic pulmonary artery embolism pulmonary artery thromboembolism pulmonary arterial embolus pulmonary arterial emboli pulmonary arterial embolic pulmonary arterial embolism pulmonary arterial thromboembolism thromboemboli clot embolus emboli embolic embolism embolisms thrombus thrombi thrombotic thrombosis thrombosed phlebitis thrombophlebitis filling defect filling defects
Words to search
Enter keywords to filter sentences, one per line.
Sentence_expander
Length threshold
Threshold length for expanding short sentences.
Joiner
Sentence delimiter
Delimiter for joining sentences.
Section delimiter
Delimiter for joining sections.
Ml_inference
vte_multiclass
bleed_binary
Model name
Name of the model used for ML inference.
Use preped text
Use preprocessed text for inference.
Edit Project
General Information
Name
Description
Date Range
-
months ≤ Index Date ≤ +
months
Only used for display purposes. Use 0 to show all data.
Annotation Type
Classification
Named-Entity Recognition
Required Patient
Annotations:
Adjudications:
Pre-fill VTE Settings
Pre-fill Bleeding Settings
Labels Information
Label Category
Label Value
Add Value
Add Label Category
NLP Settings
Enable All
Disable All
Encoding_fixer
Pattern_replacer
Pattern
Regex pattern to replace in the text.
Target
Target string to replace matched pattern.
Word_masker
PE CT PE-CT PE/CT CT PE CT/PE CT-PE DVT US DVT U/S DVT ultrasound PE protocol PE study PE technique PE scan DVT protocol DVT study DVT technique DVT scan VTE prophylaxis VTE prophy VTE ppx DVT prophylaxis DVT prophy DVT ppx
Words to mask
Enter words to mask, one per line.
Mask char
Character used for masking.
Note_filter
DVT PE VTE deep vein thrombus deep vein thrombi deep vein thrombosis deep vein thromboses deep vein thromboembolism deep venous thrombus deep venous thrombi deep venous thrombosis deep venous thromboses deep venous thromboembolism pulmonary embolus pulmonary emboli pulmonary embolic pulmonary embolism pulmonary thromboembolism pulmonary artery embolus pulmonary artery emboli pulmonary artery embolic pulmonary artery embolism pulmonary artery thromboembolism pulmonary arterial embolus pulmonary arterial emboli pulmonary arterial embolic pulmonary arterial embolism pulmonary arterial thromboembolism thromboemboli clot embolus emboli embolic embolism embolisms thrombus thrombi thrombotic thrombosis thrombosed phlebitis thrombophlebitis filling defect filling defects
Words to search
Enter keywords to search in notes, one per line.
Section_splitter
Delimiter
Delimiter used to split sections.
Section_filter
chief complaint cc: present illness history of present illness hpi clinical presentation clinical history interval history interim history clinical hx interval hx interim hx patient history patient hx subjective subj assessment impression impressions plan suggestion discussion conclusion conclusions recommendation rec recs a&p a &p a& p a/p a /p a/ p ap a p: s: a: p: attestation addendum attending note staff note teaching physician note ed course hospital course hospital summary brief summary of hospital course brief hospital course
Section inc list
Enter keywords to include sections, one per line.
review of system system review systems review hematologic history hematological history heme history oncological history oncologic history onc history hematologic hx hematological hx heme hx oncological hx oncologic hx onc hx past h past med past surg medical h social h family h medication allerg physical exam vital ros pmh: pmhx psh: pshx sh: shx fh: fhx med: meds general gen: pe: v/s data lab labs laboratory image imaging radiology pathology path problem problems objective obj o: diagnosis discharge condition disposition discharge medication medication list consults procedures
Section exc list
Enter keywords to exclude sections, one per line.
Fallback
Enable fallback behavior if no sections match.
Sentence_segmenter
en_core_sci_lg
Model name
Name of the model used for sentence segmentation.
Batch size
Batch size for processing.
Duplicate_checker
Num perm
Number of permutations for MinHash.
Sim threshold
Similarity threshold for duplicates.
Length threshold
Length threshold for checking duplicates.
Sentence_filter
DVT PE VTE deep vein thrombus deep vein thrombi deep vein thrombosis deep vein thromboses deep vein thromboembolism deep venous thrombus deep venous thrombi deep venous thrombosis deep venous thromboses deep venous thromboembolism pulmonary embolus pulmonary emboli pulmonary embolic pulmonary embolism pulmonary thromboembolism pulmonary artery embolus pulmonary artery emboli pulmonary artery embolic pulmonary artery embolism pulmonary artery thromboembolism pulmonary arterial embolus pulmonary arterial emboli pulmonary arterial embolic pulmonary arterial embolism pulmonary arterial thromboembolism thromboemboli clot embolus emboli embolic embolism embolisms thrombus thrombi thrombotic thrombosis thrombosed phlebitis thrombophlebitis filling defect filling defects
Words to search
Enter keywords to filter sentences, one per line.
Sentence_expander
Length threshold
Threshold length for expanding short sentences.
Joiner
Sentence delimiter
Delimiter for joining sentences.
Section delimiter
Delimiter for joining sections.
Ml_inference
vte_multiclass
bleed_binary
Model name
Name of the model used for ML inference.
Use preped text
Use preprocessed text for inference.
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